PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g002880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 119aa MW: 13851.7 Da PI: 10.9442

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g002880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.4	3.4e-13	18	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky Csa20g002880.1 18 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 62 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-17	12	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.942	13	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-7	16	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-19	16	65	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	17	65	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-11	18	62	IPR001005	SANT/Myb domain
CDD	cd00167	1.84E-7	20	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
KRTSXKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ 60 KYFLKVQKNG TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMTFPPQI NNLPGYTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250, ECO:0000269\|PubMed:17363273}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g002880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ937209	1e-142	AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene).
GenBank	AK317012	1e-142	AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03.
GenBank	AY042894	1e-142	AY042894.1 Arabidopsis thaliana putative protein (F9G14_150) mRNA, complete cds.
GenBank	AY081522	1e-142	AY081522.1 Arabidopsis thaliana putative protein (At5g02840) mRNA, complete cds.
GenBank	AY519514	1e-142	AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010452136.1	3e-81	PREDICTED: protein REVEILLE 4-like isoform X3
Refseq	XP_010452139.1	3e-81	PREDICTED: protein REVEILLE 4-like isoform X3
Refseq	XP_010452141.1	3e-81	PREDICTED: protein REVEILLE 4 isoform X2
Swissprot	Q6R0G4	3e-79	RVE4_ARATH; Protein REVEILLE 4
TrEMBL	A0A397XPA4	7e-78	A0A397XPA4_BRACM; Uncharacterized protein
TrEMBL	A0A397XZ05	8e-78	A0A397XZ05_BRACM; Uncharacterized protein
TrEMBL	D7M7W6	8e-78	D7M7W6_ARALL; Uncharacterized protein
STRING	XP_010423810.1	2e-80	(Camelina sativa)
STRING	XP_010452132.1	2e-80	(Camelina sativa)
STRING	XP_010452137.1	2e-80	(Camelina sativa)
STRING	XP_010452140.1	2e-80	(Camelina sativa)
STRING	XP_010456368.1	1e-80	(Camelina sativa)
STRING	XP_010490751.1	2e-80	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02840.3	9e-68	LHY/CCA1-like 1

Publications ? help Back to Top
Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]