PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g003780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 642aa    MW: 71770.2 Da    PI: 6.7221
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g003780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.31.2e-29124209187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+y+k+keg+ +r  ++ +++++f+qlea
  Csa20g003780.1 124 RWPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYRKTKEGKAGR--QDGKHYRFFRQLEA 209
                     8*************************************999*****************************98..55667*******85 PP
2trihelix63.64.4e-20473558182
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                     +W +qe+ +L+e+r++m++++++   g++++ lWee+++k+ + gf +rs+  Ckekwe++++ ++k+k++ +k+++++ss+c  +
  Csa20g003780.1 473 CWDEQEIIKLMEIRTSMDSAFQEilgGCSDEFLWEEIAAKLVQLGFdQRSALLCKEKWEWISNGMRKEKKQINKKRKDNSSSCGVY 558
                     7*********************98889*******************999********************99999988998888655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98123182IPR017877Myb-like domain
CDDcd122032.47E-19124189No hitNo description
PfamPF138373.0E-20124210No hitNo description
PfamPF138376.9E-12472558No hitNo description
CDDcd122033.22E-19472541No hitNo description
PROSITE profilePS500906.051474531IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MDQDQHPQYG IPELRQLMKG GGRTTTTSPS TSSHFPSDFF GFNLAPALPQ QPHRLHQFTT  60
DQEMGFLPRG IHGLGGGSSS TAGNNNSNLN ASTSGGGGGV GFSGFLDGGG FGGGVGGDGG  120
GTGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN  180
LYKYYRKTKE GKAGRQDGKH YRFFRQLEAL YGDSNNLVSC PNHNTQFMSS AIHGFHTQNP  240
MNVTTTTSNI HNVDSVHGFH QSLSLSNNYN SSELELMTSS SEGNDSSSRR KTRSWKGKIK  300
EFIDANMKKL IERQDVWLEK LTKVIEDKEE QRMMKEEEWR KTEAARIDKE HLFWAKERAR  360
MEARDVAVIE ALQYLTGKPL VKPLCSSPEE RINGNNEIRN NSENQNENGS DQTMTNNVTV  420
KGSGKPLIKP LCSSPEERIN GNNEIRNNSE NQNENGSDQT MTNNVTVKGS GSCWDEQEII  480
KLMEIRTSMD SAFQEILGGC SDEFLWEEIA AKLVQLGFDQ RSALLCKEKW EWISNGMRKE  540
KKQINKKRKD NSSSCGVYYP RTEENPIYNN QESGYNDNDQ HQMNEQGNVG SSTSNANANV  600
TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKGDN Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g003780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5557280.0AY555728.1 Arabidopsis thaliana trihelix transcription factor (PETAL LOSS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490858.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS00.0PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A178U7740.0A0A178U774_ARATH; PTL
STRINGXP_010490858.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.10.0Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]