PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g003940.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 237aa MW: 27032.6 Da PI: 9.1798

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g003940.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	81	133	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ ql Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Csa20g003940.2 81 KKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWK 133 45699***********************************************9 PP
2	HD-ZIP_I/II	116.2	1.9e-37	80	170	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kk+rl++ q+++LE+sF+ee kL+++rKv+l+reLglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l+ Csa20g003940.2 80 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHEEVKKLRAILR 170 9**************************************************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-18	70	137	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	75	135	IPR001356	Homeobox domain
SMART	SM00389	4.5E-17	77	139	IPR001356	Homeobox domain
CDD	cd00086	4.37E-15	80	136	No hit	No description
Pfam	PF00046	4.3E-16	81	133	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-19	82	142	IPR009057	Homeodomain-like
PRINTS	PR00031	4.2E-5	106	115	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	110	133	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.2E-5	115	131	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEWSTTSNVE NVRVAFMPPP WAPESSSFNS LHSFGFDPYA GNLYTPPADT QTGPVIAVPE 60 PEKIMNAYRF PNNNNEMMIK KKRLTSGQLA SLERSFQEEI KLDSDRKVKL SRELGLQPRQ 120 IAVWFQNRRA RWKAKQLEQL YDSLRQEYDV VSREKQMLHE EVKKLRAILR EQGLIKKPIS 180 TGTIKVSSEE DTAELPSMVV AHPRTENLNS IGHQIYGTEQ YNNPMMAASS GWSSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g003940.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU352029	1e-148	EU352029.1 Arabidopsis lyrata At5g03790-like protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010490871.1	1e-176	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-147	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	R0FIS6	1e-153	R0FIS6_9BRAS; Uncharacterized protein
STRING	XP_010490871.1	1e-176	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-150	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]