PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g005540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 234aa    MW: 24489.3 Da    PI: 8.3898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g005540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001185107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k Fs+   L  H  +H
  Csa20g005540.1  85 YKCGVCDKAFSSYQALGGHKASH 107
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.88E-784107No hitNo description
Gene3DG3DSA:3.30.160.605.3E-485107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.95185112IPR007087Zinc finger, C2H2
SMARTSM003550.03485107IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-1285109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-7143168No hitNo description
SMARTSM00355110148168IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-7148170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALEALTSPR LASPMPTLFQ DSGVGFHGSK GKRSKRSRSE FDRHSLTEDE YIALCLMLLA  60
RDGDRTHDVN LTSSSPALLP PTPIYKCGVC DKAFSSYQAL GGHKASHRKN FSASQSAGGD  120
ELPTSSSAIT SSDISGGGGG GGSVVKSHVC SICHKSFGQA LGGHKRCHYE GKTGGSSSVS  180
NSEGVGSTSH VSSSHRGFDL NIPLIPEFSM VNGEDEVMSP MPAKKLKHNN SSY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g005540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0226581e-171AF022658.1 Arabidopsis thaliana putative c2h2 zinc finger transcription factor mRNA, complete cds.
GenBankAK1188681e-171AK118868.1 Arabidopsis thaliana At5g04340 mRNA for putative C2H2 zinc finger transcription factor, complete cds, clone: RAFL21-19-J24.
GenBankCP0026881e-171CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490943.11e-170PREDICTED: zinc finger protein ZAT6-like
SwissprotO225331e-108ZAT6_ARATH; Zinc finger protein ZAT6
TrEMBLA0A178UKV21e-105A0A178UKV2_ARATH; ZAT6
STRINGXP_010490943.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.17e-84zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li Y, et al.
    The C2H2 zinc-finger protein SlZF3 regulates AsA synthesis and salt tolerance by interacting with CSN5B.
    Plant Biotechnol. J., 2018. 16(6): p. 1201-1213
    [PMID:29193661]
  6. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]
  7. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]
  8. Shi H,Liu G,Wei Y,Chan Z
    The zinc-finger transcription factor ZAT6 is essential for hydrogen peroxide induction of anthocyanin synthesis in Arabidopsis.
    Plant Mol. Biol., 2018. 97(1-2): p. 165-176
    [PMID:29675814]