PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g005590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 370aa    MW: 40571.1 Da    PI: 8.5586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g005590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Csa20g005590.1 156 YQCKTCDRTFPSFQALGGHRASH 178
                     9***********99999998887 PP
2zf-C2H213.10.00029236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa20g005590.1 236 HECGICGAEFTSGQALGGHMRRH 258
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.82E-8155178No hitNo description
PfamPF139122.1E-12155180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471156183IPR007087Zinc finger, C2H2
SMARTSM003550.028156178IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576676.82E-8231258No hitNo description
Gene3DG3DSA:3.30.160.607.5E-4234260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11235260IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93236260IPR007087Zinc finger, C2H2
SMARTSM003550.047236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEAFEEATKE QSLILKGKRT KRQRTQSPIP FSIALPIVSS LARDMEGESI DLDSKDNALG  60
NDQGNHKKDG MITSSSSSAS WSSQNNPTLK TAEDEEDQDI ANCLILLAQG HFLPHNNNHL  120
TNSNNNNNNN TYRFTSRKFL ETSSSNGGGK AGYYVYQCKT CDRTFPSFQA LGGHRASHKK  180
PKATSFYTNL DLKKNIYAND AASLVTTTTV YNNNNKNNNN RSLVVYGKAS NYNKVHECGI  240
CGAEFTSGQA LGGHMRRHRG AVVVTATVAP MVTVATTAAN TELSLSSMSF DQISDGQDHL  300
VMPAKKKARK TVVSLDLDLN LPAPEDEIRV NGFSLASKQN HEQEHQQKKQ REEPKSLVLS  360
APTLVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g005590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490947.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLQ84K310.0Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGXP_010490947.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.10.0C2H2 family protein