PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g006350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 214aa    MW: 23984.6 Da    PI: 4.5247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g006350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-053456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C+k+F     L  H++ H
  Csa20g006350.1 34 YQCKYCPKRFVKTQALGGHQNAH 56
                    9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-63261No hitNo description
PfamPF139125.9E-63459IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-43460IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.9263461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDPIDYEILS LDSSDVSDSS NDSSATEPLE SPKYQCKYCP KRFVKTQALG GHQNAHRKER  60
ELIRKQNQAF QTQLEEPDLD IYVYSNSRSH SFPYQYALPP EFEEPRYKND RSHNLTMMCD  120
QYMGSSSSSF AGLRSDPSQE TSQGRIFTEI PPQPQSQPQL PQPLLFPLSP LCLDLCLGVG  180
NSQPQHEEPN GVTNEIIAET ENVGSPLSLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g006350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491042.11e-156PREDICTED: zinc finger protein 3-like
TrEMBLQ9FF627e-72Q9FF62_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRINGXP_010491042.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.15e-52C2H2 family protein