PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 274aa    MW: 31041.8 Da    PI: 7.5351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-083075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + +  +   +W ++a +++ g+t  ++   + k
   Csa20g008050.1 30 SWTKEENKKFERALAVYADDtpdRWFKVADMIP-GKTISDVMRQYSK 75
                     7*****************99*************.******9998877 PP
2Myb_DNA-binding35.81.8e-11132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   + + q+ s+ qky
   Csa20g008050.1 132 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKPPTQVASHAQKY 176
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5042679IPR017884SANT domain
SMARTSM007179.7E-82779IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-112983IPR009057Homeodomain-like
CDDcd001671.54E-73076No hitNo description
PfamPF002491.2E-63075IPR001005SANT/Myb domain
PROSITE profilePS5129416.95125181IPR017930Myb domain
SuperFamilySSF466895.46E-14127180IPR009057Homeodomain-like
SMARTSM007171.5E-9129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.8E-15129180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-9129178IPR009057Homeodomain-like
CDDcd001679.45E-9132176No hitNo description
PfamPF002495.4E-9132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METLHPLISH VPTSDHRFVV QEMMCLQSSS WTKEENKKFE RALAVYADDT PDRWFKVADM  60
IPGKTISDVM RQYSKLEEDL FDIEAGLVPI PGYRSAPCGF DDQLVSQRDF DAYRKLPNGA  120
RGFDQDRRKG VPWTEEEHRR FLLGLLKYGK GDWRNISRNF VGSKPPTQVA SHAQKYYQRQ  180
VSGAKDKRRP SIHDITTVNL LNANLSRPSS DQGCFVSQQA EPKQGFTHRD NADQERVMFL  240
GQNLSSVLSP CDPTINFAGA DVYCDGGYTI TRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1631951175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195310.0AY519531.1 Arabidopsis thaliana MYB transcription factor (At5g05790) mRNA, complete cds.
GenBankBT0260540.0BT026054.1 Arabidopsis thaliana At5g05790 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491116.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-70DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0H8S80.0R0H8S8_9BRAS; Uncharacterized protein
STRINGXP_010491116.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]