PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 229aa    MW: 25208.5 Da    PI: 8.7437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ Cg+ F++   L  H+++H
  Csa20g008280.1 53 YSCSFCGREFKSAQALGGHMNVH 75
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-65079No hitNo description
Gene3DG3DSA:3.30.160.602.4E-45177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1545380IPR007087Zinc finger, C2H2
SMARTSM003550.00175375IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-65376IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MERGKCLMSM KLRPVVTKPS SDAPFFWPFG EEGALAVEEY GGGGGCMWPP RSYSCSFCGR  60
EFKSAQALGG HMNVHRRDRA RLKQQSLSPS STDQATPPGY DRHQQQPQQV LDVGSKVLVQ  120
EESRKPTGTK REISDVCSNN VLENPTKRAE HDNDGVKTDL SVGLLSSEFD PRKKQLINGS  180
SSSWKRAKTD ISRFPMMLGL VIGVSKINGH HDELDLELRL GADPPKVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-124875229superman protein
2l1o_A3e-124875229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1073710.0AB107371.1 Arabidopsis thaliana RBE mRNA for one finger-type zinc finger protein for RABBIT EARS, complete cds.
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankAY0888610.0AY088861.1 Arabidopsis thaliana clone 97505 mRNA, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491152.11e-170PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-143RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLR0HEW61e-150R0HEW6_9BRAS; Uncharacterized protein
STRINGXP_010491152.11e-169(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-145C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]