PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 255aa    MW: 28881.9 Da    PI: 4.3665
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.67.6e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dCv++pyf  e+ +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ +l++e+
  Csa20g008290.1   7 SCGACKFLRRKCNRDCVFSPYFSYEEaSSHFAAVHKVFGASNVSKHLLQLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEI 101
                     6*********************998868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  Csa20g008290.1 102 EFLGSQ 107
                     998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.466108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EEASSHFAAV HKVFGASNVS KHLLQLPLHQ  60
RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSNQNGSQ  120
LNNVPEFVNQ MTMDTTSFVD ESLLNYNEEG RNCLDGFFTN SEETLVVTLQ EEIEFLGSQM  180
TNFSYSNQNG SQLNNVPEFV NQMTMDTTSF VDESLLNYNE EGRNCLDGFF TNSEETLVNH  240
TWLQDMDYYY APHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431187121LOB family transfactor Ramosa2.1
5ly0_B2e-3431187121LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738570.0AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491154.11e-120PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS81e-109LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ361e-110D7LZ36_ARALL; Predicted protein
STRINGXP_010491154.11e-120(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-111LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]