PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 505aa    MW: 58060.3 Da    PI: 8.8995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.4e-08448491445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k ++++   +W+++a  ++ g+t +qck ++ 
   Csa20g008320.1 448 WSDVQERALVQALKTFPKEtnqRWERVATAVP-GKTMNQCKKKFA 491
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.1E-1976178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.9E-1996199IPR001623DnaJ domain
SMARTSM002713.1E-1399174IPR001623DnaJ domain
PROSITE profilePS5007617.193100182IPR001623DnaJ domain
CDDcd062571.59E-12100171IPR001623DnaJ domain
PfamPF002268.8E-17100179IPR001623DnaJ domain
PRINTSPR006253.2E-7105123IPR001623DnaJ domain
PRINTSPR006253.2E-7123138IPR001623DnaJ domain
PRINTSPR006253.2E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
SMARTSM007171.2E-8444496IPR001005SANT/Myb domain
SuperFamilySSF466892.11E-9447500IPR009057Homeodomain-like
PROSITE profilePS500907.236448494IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-5448493IPR009057Homeodomain-like
CDDcd001677.68E-6448494No hitNo description
PfamPF002494.7E-7448492IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSSELA DGKALYVSSN CHPVKALHRE PAGHAFHAAA LKLRGCAKEA  60
TGKNEDTDKK VPKEKDSEYI PSYDSHNNKG KKKSGKQQHD HYALLGLGNL RYLATEDQIR  120
KSYRDAALKH HPDKLAPLLL AEVTEEAKQA KKDEIESHFK LIQEAYEILM DSTKRRIFDS  180
TDEFDDEVPS DCAPKDFFKV FGPAFKRNAR WSTNPRVPDL GDENTPLKEV DSFYSWWYSF  240
KSWREFPEEE EHDIEQAESR EEKRWMEREN TKKSQKARKE EHARIRVLVD NAYKKDIRIV  300
KRKEEEKAMK LQKKEEKIMA KRKLEEEAAA AIEEERRRKE EEAKRTSQRW EVISEYIGTG  360
RSVEEILKAT KTVLLQKPDS AKAFDSFLEN RKPAASIASP LSTREELGEP IIATKPHEED  420
NSTKTETTKQ NSKGEENNNS KPADPEGWSD VQERALVQAL KTFPKETNQR WERVATAVPG  480
KTMNQCKKKF AELKDIVRTK KPTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1419629920123Zuotin
5dje_B2e-1419629920123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320338KRKLEEEAAAAIEEERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491158.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLR0FE250.0R0FE25_9BRAS; Uncharacterized protein
STRINGXP_010491158.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-178DnaJ domain ;Myb-like DNA-binding domain