PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g008810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 126aa    MW: 14073 Da    PI: 10.8915
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g008810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA67.14.4e-211451058
       CBFB_NFYA 10 QyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                    Qy++I++RR +Rak+e+   l +++rkpy+h+SRh hA+rRpRgsgGrF
  Csa20g008810.1  1 QYHGIIRRRLSRAKAEK---L-SRCRKPYIHHSRHLHAMRRPRGSGGRF 45
                    9***************9...6.888***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-17148IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-18145IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115226.423148IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
QYHGIIRRRL SRAKAEKLSR CRKPYIHHSR HLHAMRRPRG SGGRFLNTKK VDATKPSNSQ  60
SSEVFHPESG TMKSSREANM PNLSGSEVTS MDYFLSSSVY TPSGMVMPIK WNAATVDTGC  120
YNLNT*
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g008810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846431e-113AY084643.1 Arabidopsis thaliana clone 114015 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491217.14e-90PREDICTED: nuclear transcription factor Y subunit A-10-like
SwissprotQ8LFU01e-69NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLR0H8U36e-78R0H8U3_9BRAS; Uncharacterized protein
STRINGXP_010491217.12e-89(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-72nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]