PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g009140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 469aa    MW: 53418.1 Da    PI: 7.265
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g009140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.2e-32283337155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  Csa20g009140.1 283 KTRLRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 337
                     68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-17280337IPR009057Homeodomain-like
PROSITE profilePS5129410.639280340IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-29282338IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23283338IPR006447Myb domain, plants
PfamPF002497.7E-9285336IPR001005SANT/Myb domain
PfamPF143796.0E-20367414IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
LALYQYSSLL HLKTLENVER FLKTQKPKPF RFHNDWYSTD FNFFVQSNPF IFFIQLITFY  60
FPSVQYIIER TTRSYVSDAK LANCVSLVSS LMDNINFEFS NASQGSQLQS QPQPPQPFNL  120
QNLNNMIQYN QPSSPWTTET FSGFPPYDCS ANQSFPLQCS SSKPYPSSFH PYHHQSSDHT  180
SSLDQTISMV PMLPLPDQYM KPLYQRSCAN DFAAANASSA SYSLSFEASQ DPQELCRRTY  240
SNSNVTHLNF SSSHQSKQIH PKFPSHTSFS SHGGPVAPNC VNKTRLRWTQ DLHEKFVECV  300
NRLGGADKAT PKAILKLMDS DGLTIFHVKS HLQKYRIAKY MPESLEGKFE KRACGKELSQ  360
LDTKTGVQIK EALQLQLDVQ RHLHEQLEIQ RNLQLRIEEQ GKQLKIMMEQ QQKTKESLMK  420
TPEAEASLSL PASDHTPDPP PPFLVQDDDT EALMLTSYGD NQLQSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23283340259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g009140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491262.10.0PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU30.0PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLD7LZU10.0D7LZU1_ARALL; Uncharacterized protein
STRINGXP_010491262.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.10.0G2-like family protein