PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g011530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 541aa MW: 59670.4 Da PI: 7.2955

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g011530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.5	9.9e-18	286	335	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Csa20g011530.1 286 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 335 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-23	284	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	284	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-19	285	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.75E-15	286	337	No hit	No description
Pfam	PF00010	3.3E-15	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PSDPKPTPPP SSQGSNLKTH DFLQPLECVG 60 GKEEISRINT TTTASEKPPP PAPPPPLQHV LPGGIGTYTI SPIPYFHHHH QRVPKPELSP 120 PMMFTAAAQA SGGNERNILD ENSNSNCSSY AAAASGFTLW DESVSGKKGQ TRKENNVGER 180 ANMRADVAAT VGQWPVVERR SQSLTNNHMS GFSSRSSSQG SGLKSQSFMD MIRSAKGSSQ 240 EDDLDDEDDF LMKKESSSTS QSHRVDLRVK ADVRGSGNDQ KLSTPRSKHS ATEQRRRSKI 300 NDRFQMLRQL IPNSDQKRDK ASFLLEVIEY IQFLQEKADK YETSYQGWNH EPAKLLNWRN 360 NQQLVPEGTV AFAPKLEEEK NNIPVPVLAT AQGVAIDHPT AATTFPLSIQ SNNFFSPVIA 420 GNPVPQFHTR VASSEAVEPI PSSRSQTQPL KEEEEVEDEE ILEGNISISS VYSQGLVKTL 480 REALENSGVD LTKASISVEI ELAKQSSSSF KDHEARGPVS RTRNEDVKQT RKPKRLKTGQ 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PSDPKPTPPP SSQGSNLKTH DFLQPLECVG  60
GKEEISRINT TTTASEKPPP PAPPPPLQHV LPGGIGTYTI SPIPYFHHHH QRVPKPELSP  120
PMMFTAAAQA SGGNERNILD ENSNSNCSSY AAAASGFTLW DESVSGKKGQ TRKENNVGER  180
ANMRADVAAT VGQWPVVERR SQSLTNNHMS GFSSRSSSQG SGLKSQSFMD MIRSAKGSSQ  240
EDDLDDEDDF LMKKESSSTS QSHRVDLRVK ADVRGSGNDQ KLSTPRSKHS ATEQRRRSKI  300
NDRFQMLRQL IPNSDQKRDK ASFLLEVIEY IQFLQEKADK YETSYQGWNH EPAKLLNWRN  360
NQQLVPEGTV AFAPKLEEEK NNIPVPVLAT AQGVAIDHPT AATTFPLSIQ SNNFFSPVIA  420
GNPVPQFHTR VASSEAVEPI PSSRSQTQPL KEEEEVEDEE ILEGNISISS VYSQGLVKTL  480
REALENSGVD LTKASISVEI ELAKQSSSSF KDHEARGPVS RTRNEDVKQT RKPKRLKTGQ  540
*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g011530.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	0.0	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491435.1	0.0	PREDICTED: transcription factor BIM1 isoform X2
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	R0FDU1	0.0	R0FDU1_9BRAS; Uncharacterized protein
STRING	XP_010491434.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]