PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g012050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 201aa    MW: 22252.3 Da    PI: 5.3848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g012050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-091155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e+d  + +a +    +   +W++Ia+ ++ g++ +q+k+++ 
   Csa20g012050.1 11 VWSREDDIAFERALANNSDEseeRWDKIAADVP-GKSVEQIKEHYE 55
                     6*****************99*************.**********96 PP
2Myb_DNA-binding42.91.1e-13119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   Csa20g012050.1 119 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 163
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.344762IPR017884SANT domain
SMARTSM007171.1E-7860IPR001005SANT/Myb domain
PfamPF002492.6E-71155IPR001005SANT/Myb domain
CDDcd001671.10E-71258No hitNo description
SuperFamilySSF466891.66E-91265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-41255IPR009057Homeodomain-like
PROSITE profilePS5129417.581111168IPR017930Myb domain
SuperFamilySSF466896.36E-17114169IPR009057Homeodomain-like
SMARTSM007173.2E-10116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-17116166IPR006447Myb domain, plants
CDDcd001678.01E-10119164No hitNo description
Gene3DG3DSA:1.10.10.607.4E-11119162IPR009057Homeodomain-like
PfamPF002491.4E-11119163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTVEEVSEGP VWSREDDIAF ERALANNSDE SEERWDKIAA DVPGKSVEQI KEHYELLVED  60
VSRIESGCVP LPDYGSPERS NGHAGDEGGS SKKGGNNHAG ESNQGGKSKA DQERRKGIAW  120
TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH  180
DITSVGNADV STPQGPITGQ N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15974873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g012050.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0720900.0AY072090.1 Arabidopsis thaliana unknown protein (At5g08520) mRNA, complete cds.
GenBankAY0965710.0AY096571.1 Arabidopsis thaliana unknown protein (At5g08520) mRNA, complete cds.
GenBankAY5195320.0AY519532.1 Arabidopsis thaliana MYB transcription factor (At5g08520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495118.21e-148PREDICTED: transcription factor DIVARICATA-like isoform X1
RefseqXP_019098036.11e-148PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ9FNN61e-139SRM1_ARATH; Transcription factor SRM1
TrEMBLD7M1F01e-138D7M1F0_ARALL; Myb family transcription factor (Fragment)
STRINGXP_010495118.11e-147(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-142MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]