PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g017130.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 230aa    MW: 25227.9 Da    PI: 4.5117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g017130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.5e-1548901055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Csa20g017130.1 48 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 90
                    46**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.7443998IPR001471AP2/ERF domain
PRINTSPR003674.4E-54253IPR001471AP2/ERF domain
CDDcd000181.45E-2846100No hitNo description
SMARTSM003807.3E-2946104IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-184799IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-264799IPR001471AP2/ERF domain
PfamPF008472.7E-94890IPR001471AP2/ERF domain
PRINTSPR003674.4E-56480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGSASVEEY YNLRSERVTQ HLVPNSESNS VSHKSKAEQK REEDETMRNW GKWVSEIREP  60
RKKSRIWLGT FPTPEMAARA HDVAALSIKG TSAILNFPEL ADSFPRPVSL SPRDIQTAAL  120
KAAHMEPMTS FSSSTSSSSS SSLSSTSSLE SLVLVMDLSR TESEELGEIV ELPSLGASYD  180
VDSSNLGNEF VFSDSMDYCL YPPPWGQSSD DNYGYGVIPN FSHGLSWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1437981072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g017130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1638140.0AL163814.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22P22 (ESSA project).
GenBankAL1638150.0AL163815.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project).
GenBankAY5608510.0AY560851.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g11590) mRNA, complete cds.
GenBankAY9401600.0AY940160.1 Arabidopsis thaliana DREB3 (DREB3) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419734.11e-140PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-122DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLD7M4A21e-127D7M4A2_ARALL; Uncharacterized protein
STRINGXP_010419734.11e-139(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-121ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]