PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g019200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 64aa    MW: 6972.15 Da    PI: 10.8965
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g019200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.36.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  Csa20g019200.1  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                    79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.842161IPR002100Transcription factor, MADS-box
CDDcd002651.44E-38262No hitNo description
SuperFamilySSF554551.7E-30261IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSSS  60
GVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22162162MEF2 CHIMERA
6byy_B4e-22162162MEF2 CHIMERA
6byy_C4e-22162162MEF2 CHIMERA
6byy_D4e-22162162MEF2 CHIMERA
6bz1_A4e-22162162MEF2 CHIMERA
6bz1_B4e-22162162MEF2 CHIMERA
6bz1_C4e-22162162MEF2 CHIMERA
6bz1_D4e-22162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g019200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052306e-59AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12.
GenBankATU225286e-59U22528.1 Arabidopsis thaliana AGL15 gene, complete cds.
GenBankCP0026886e-59CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289158.13e-35agamous-like MADS-box protein AGL15 isoform X3
RefseqXP_010419983.14e-35PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
RefseqXP_023636657.13e-35agamous-like MADS-box protein AGL15 isoform X1
RefseqXP_023636658.13e-35agamous-like MADS-box protein AGL15 isoform X2
SwissprotQ392957e-35AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLR0FJ297e-34R0FJ29_9BRAS; Uncharacterized protein
STRINGCagra.5588s0006.1.p1e-34(Capsella grandiflora)
STRINGXP_006289158.11e-34(Capsella rubella)
STRINGXP_010419983.11e-34(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-36AGAMOUS-like 15