PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g020460.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 234aa    MW: 26663.7 Da    PI: 9.9348
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g020460.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.77e-34421671128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lp G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d+++++P ++p   +++ek+ yfF+k+++ +++++r +    +gyWk  gk++++++ 
  Csa20g020460.1  42 LPIGYRFHPTEQELILHYLLPKAFASPLPS-SIIPVFDLFYSHPLTFPG--DQKEKQRYFFCKKKEVSSNEHRIKILSGDGYWKPIGKERPIIA- 132
                     699*************************99.88***************4..4578899************************************. PP

             NAM  96 kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      g++vg+++tL+fy  ++++++ +kt+W m ey l
  Csa20g020460.1 133 CGRAVGIRRTLAFYetNKSSSDCNKTRWSMTEYCL 167
                     999***********4334566678*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4036186IPR003441NAC domain
PROSITE profilePS5100537.13342187IPR003441NAC domain
PfamPF023652.9E-1943167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MLIIKVLILI HSLRTNLKKE RKGRREDMEV EKRIVVNGGM RLPIGYRFHP TEQELILHYL  60
LPKAFASPLP SSIIPVFDLF YSHPLTFPGD QKEKQRYFFC KKKEVSSNEH RIKILSGDGY  120
WKPIGKERPI IACGRAVGIR RTLAFYETNK SSSDCNKTRW SMTEYCLAGF ASAKVFGEWA  180
VYNVYERKGT KARKQRKSRD IGDEDLSCSI HFTVGSDHET GPPPPSPPTS ADE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20241675140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g020460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842160.0AY084216.1 Arabidopsis thaliana clone 100085 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492188.11e-174PREDICTED: NAC domain-containing protein 83-like
TrEMBLD7M5Z01e-133D7M5Z0_ARALL; ANAC084
TrEMBLR0FGA41e-132R0FGA4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010492188.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-135NAC domain containing protein 84