PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g024410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 419aa    MW: 45879.2 Da    PI: 7.5535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g024410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-104872226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C+++ rtG C++G++C+F+H+
  Csa20g024410.1 48 GEPDCSYYIRTGLCRFGSTCRFNHP 72
                    789*********************8 PP
2zf-CCCH39.21.2e-1294118327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tGtCk+G +CkF+H++
  Csa20g024410.1  94 QPECEFYMKTGTCKFGVTCKFHHPR 118
                     799********************96 PP
3zf-CCCH37.53.9e-12137161327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C++f+rtG+Ck+G++CkF+H+p
  Csa20g024410.1 137 EDDCSYFLRTGHCKFGGTCKFNHPP 161
                     578********************97 PP
4zf-CCCH35.22e-11287310427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C+f+++tG Ck+G  CkF+H++
  Csa20g024410.1 287 LECQFYMKTGDCKFGTVCKFHHPR 310
                     58********************96 PP
5zf-CCCH37.73.3e-12331356227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++lC f++r+G+Ck+G++CkF H++
  Csa20g024410.1 331 GEPLCVFYSRYGICKFGPSCKFDHPM 356
                     579*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1364674IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-74872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-55174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-45273IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-591118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0891119IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-1094118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-497118IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6135162IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4140159IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981283311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6287312IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8288310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4289311IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192329357IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9331356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5332356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4334354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDFDSRVPIT RESTSLSPLL HQNAMWQMNL GSDETMSGCD GFYPERQGEP DCSYYIRTGL  60
CRFGSTCRFN HPHDRKLVIA TARAKGEYPE RIGQPECEFY MKTGTCKFGV TCKFHHPRNN  120
AGTDDGRVSV YPLRPNEDDC SYFLRTGHCK FGGTCKFNHP PTQSTKLMVS VRGSPVYSAL  180
QSLTGQQSYS WPRTSCVATP PRFQDPSSIA SLVLPQGGVV SVQGWNGYGG QLGSLSPSGS  240
DQNYRNQRQN DAEESSGSQG GLFSSEFHSG SSVPLCLYAF PERPGQLECQ FYMKTGDCKF  300
GTVCKFHHPR DRQTPAPDCV LSTVGLPLRL GEPLCVFYSR YGICKFGPSC KFDHPMGVFT  360
YNNNAAAPSS SSSSSLHQET ALTTQLRNLL VSSPVEATLP SSVSDTTSAK DTTVDAQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g024410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1388720.0AF138872.1 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds.
GenBankAY0846340.0AY084634.1 Arabidopsis thaliana clone 113763 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492565.10.0PREDICTED: zinc finger CCCH domain-containing protein 57
SwissprotQ8L7N80.0C3H57_ARATH; Zinc finger CCCH domain-containing protein 57
TrEMBLR0H7930.0R0H793_9BRAS; Uncharacterized protein
STRINGXP_010492565.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.10.0zinc finger nuclease 3
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]