PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g024750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 485aa    MW: 53643.5 Da    PI: 4.6178
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g024750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35301222103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ +nsfvv++  ef+k +LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  Csa20g024750.1  30 FLSKTYDMVDDPLTNEVVSWSSGNNSFVVWNVPEFSKLLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKS 115
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  Csa20g024750.1 116 ISRRKTS 122
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.58E-3425119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-3826119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5826119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-3030119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MESVRESAPS ANSNTPAVTI PPPVNSVPPF LSKTYDMVDD PLTNEVVSWS SGNNSFVVWN  60
VPEFSKLLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK QLLKSISRRK  120
TSHVQQNQQQ TQVQNSSVGA CVEVGKFGLE EEVERLKRDK NVLMQELVRL RQQQQATENQ  180
LQNVGQKVQV MEQRQQQMMS FLAKAVQSPG FLNQLVQQNN DGSRQIPGSN KKRRLPGDEQ  240
ENCGTHEAND RNRQIVRYQP SINEAAHNML RQFLNPSSSP QYESVSNNSD SFLLGDVPSS  300
NPVDNGNPSN KVSGVTLAEV SPMAAPSATN QVQVNLAHHP QPGLVQPIVG SSLAQGVAPA  360
ASWSPESDLV GCETGNGECF DPIMAALDAL EGDAISPEGE GKMNELLEGT PKLPGVQDPF  420
WEQFFSDESQ AIGDTDEILS GSVENNDMVV EQEPPTTNEW SRNQQQMNYL TEQMGLLSSE  480
AQRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262512215123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g024750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY140680.0Y14068.1 Arabidopsis thaliana mRNA for heat shock factor 3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492612.10.0PREDICTED: heat stress transcription factor A-1b-like isoform X1
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLR0FKX10.0R0FKX1_9BRAS; Uncharacterized protein
STRINGXP_010492612.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]