PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g025580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 565aa    MW: 61925.8 Da    PI: 6.6951
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g025580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.7e-12198253255
             AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Csa20g025580.1 198 IYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 253
                     69******************88885445536655.779999**************98 PP
2AP251.23.1e-16296347155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Csa20g025580.1 296 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 347
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-9197253IPR001471AP2/ERF domain
CDDcd000181.29E-18197263No hitNo description
SMARTSM003806.2E-23198267IPR001471AP2/ERF domain
PROSITE profilePS5103217.319198261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-12198262IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15198263IPR016177DNA-binding domain
PRINTSPR003672.5E-6199210IPR001471AP2/ERF domain
PfamPF008473.9E-11296347IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17296357IPR016177DNA-binding domain
CDDcd000181.77E-24296357No hitNo description
SMARTSM003805.0E-33297361IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-17297356IPR001471AP2/ERF domain
PROSITE profilePS5103218.742297355IPR001471AP2/ERF domain
PRINTSPR003672.5E-6337357IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH RTDLDSSPTT TAVDVAGEYC FDLAAAASDG SSAVQTSFPS  60
PFGVVLEAFT RDNNSHSREQ RPRLTHLENF LGRTSTIYNT NENVGDGSGG CGGDGGGGGS  120
LGLSMIKTWL SNQPVANVNH QDNGNGARGL SLSMNSSTTC DSNNYINNND VVQEKTIVDV  180
VEATPKKTIE SFGQRTPIYR GVTRHRWTGR YEAHLWDNSC KREGQTRKGR QGGYDKEEKA  240
ARAYDLAALK YWGTTTTTNF PMSSYEKEVE EMKHMTRQEY VASLRRKSSG FSRGASIYRG  300
VTRHHQHGRW QARIGRVAGN KDLYLGTFGT QEEAAEAYDI AAIKFRGLSA VTNFDMSRYN  360
VKAILESPSL PIGSSAKRLK DVNSPIPSMM ISNNNVSESA SNVSGWQNAA FQHHQGMDLS  420
VLQQQQERYV GYYNGGNLSS ESTRVCSKQE EEQQRFLSNS IDHHSSTSDD SVTVCGNVVG  480
YGGYQGFAIP VGTSVNCDAF TAAEIAYNAR NHYYYAQQQQ QQQMQQIPEG DFPVAISNNV  540
GSNMFFHGDG GGEGASMFTV WNGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g025580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856840.0AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492696.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGXP_010492696.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]