PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 257aa    MW: 29502.6 Da    PI: 10.0244
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23.1e-132593797
                    EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    +l+ ++g sW+vk+  +k++   y+  +GW++Fv++ngL e++ ++F+++ +++f   v ++
  Csa20g026260.1  2 VLTVPWGCSWQVKI--SKNPFFhYMEDRGWNQFVNDNGLGENEYLTFTHEANMCF--SVNIY 59
                    78889*********..99999867777**********************999999..66665 PP
2B3551.5e-171772541597
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      l +pkkfa+ h+ +  e+k  ++ +++g +sWev++    ++ +  +++GW++F+k+ gL++gD+++Fkl++   +e++vkv 
  Csa20g026260.1 177 FLGIPKKFADMHMPN--ETKVFKIHHPRGkKSWEVTY--FVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIE--PTEMCVKVS 254
                     468*********866..56689999999989******..4444455699*********************986..677788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.337162IPR003340B3 DNA binding domain
SMARTSM010190.093162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-13163IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-11159IPR003340B3 DNA binding domain
CDDcd100175.99E-11159No hitNo description
SuperFamilySSF1019366.47E-13266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-21160253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-20160254IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816163256IPR003340B3 DNA binding domain
CDDcd100173.75E-17164255No hitNo description
SMARTSM010193.7E-18166256IPR003340B3 DNA binding domain
PfamPF023621.4E-13177253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVLTVPWGCS WQVKISKNPF FHYMEDRGWN QFVNDNGLGE NEYLTFTHEA NMCFSVNIYE  60
SNGKEMLRPR QSSTITSSSG RNKREERKSI FIDVKKEVET ESCSESGHPV LKTAESTSGR  120
SKQKQELNLR KRETKETTKS KKRKNRKVDT VSNDSEAGTS SRVPEFKITI KKSHLLFLGI  180
PKKFADMHMP NETKVFKIHH PRGKKSWEVT YFVTDVQSRF SAGWSRFAKE LGLEVGDVCT  240
FKLIEPTEMC VKVSKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129143RKRETKETTKSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019098086.10.0PREDICTED: B3 domain-containing protein At5g18000-like
SwissprotQ9FJG21e-138Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLR0FIQ91e-150R0FIQ9_9BRAS; Uncharacterized protein
STRINGXP_010495263.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-137VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]