PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 158aa    MW: 18544.9 Da    PI: 9.0526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.22.6e-26161383126
             NAM   3 pGfrFhPtdeelvveyL.kkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                     +GfrFhPt++el+ + L ++kv+++++++ e  +++d+y  ePw+L  ++  +   e ++wy+F++r  k+    rk r  t +g+Wka gk  +
  Csa20g026400.1  16 VGFRFHPTEQELIRYCLgRNKVAKTSNKVLELEDKTDLYAKEPWRLThTE--TdffEPNQWYYFVTRTGKS----RKVRgETCEGRWKALGKLSN 104
                     7************99994457888889998888888**********8322..2245778*******98875....77777999*********999 PP

             NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                     v+s+ k+e++g k+++ fy   + +++++ W+m ey
  Csa20g026400.1 105 VVSEdKREVIGNKRSFSFY--VKGESTSSGWTMTEY 138
                     999867788**********..34444689******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-2913155IPR003441NAC domain
PROSITE profilePS5100530.99314157IPR003441NAC domain
PfamPF023657.1E-1716138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSMVEKYNEK EQQEFVGFRF HPTEQELIRY CLGRNKVAKT SNKVLELEDK TDLYAKEPWR  60
LTHTETDFFE PNQWYYFVTR TGKSRKVRGE TCEGRWKALG KLSNVVSEDK REVIGNKRSF  120
SFYVKGESTS SGWTMTEYYP LDGGSFQNQV LCHLKRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492801.11e-115PREDICTED: NAC domain-containing protein 30-like
TrEMBLR0HBL01e-76R0HBL0_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010492801.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-42NAC domain containing protein 88