PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 290aa    MW: 33338.4 Da    PI: 8.5979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1618109196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffk+l + d +++ +  +p +f++++++ +  s  ++l+ ++g sW++++  +++ +  ++ +kGW +F ++n+L +++f++F+++g+++f   v
  Csa20g026430.1  18 FFKILRRGDLSSEIMRGIPLNFIKSISE-EDLSANIVLKVSWGSSWTIRI--SRNLCFyFMEKKGWDQFLSDNDLGDNEFLTFTHKGHRCF--SV 107
                     8999999999999999*******99954.46899****************..999999555669*********************999998..55 PP

                     EE CS
              B3  95 kv 96 
                      +
  Csa20g026430.1 108 DI 109
                     55 PP
2B340.16.6e-132052851599
                     -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      l +pk f + h+ k  e+++ ++ d e+  sW+v +++ +++++  + +GW + +k+ gL  gD+++F+l++   +e+vv+v r+
  Csa20g026430.1 205 FLGIPKMFEQLHMPK--ETTMFKIHDpERETSWDVMYKFINNKQSR-FCAGWIRLAKDLGLTIGDVCTFTLVK--PTEMVVTVTRR 285
                     467999997666533..5569999996777*********6666664.456********************976..77789999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1611111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1714116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1716110No hitNo description
PfamPF023625.0E-1518109IPR003340B3 DNA binding domain
SMARTSM010195.3E-1818113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.9718113IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125191286IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-15192285IPR015300DNA-binding pseudobarrel domain
CDDcd100178.52E-14192284No hitNo description
SuperFamilySSF1019361.79E-18192285IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-13194286IPR003340B3 DNA binding domain
PfamPF023629.4E-10204285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMNRVFGEMI DDAEKPGFFK ILRRGDLSSE IMRGIPLNFI KSISEEDLSA NIVLKVSWGS  60
SWTIRISRNL CFYFMEKKGW DQFLSDNDLG DNEFLTFTHK GHRCFSVDIY QIDGMELLRP  120
RKSAPTVASS SGLNKTEQRE NMFEHSSSES SYLGLKTAES TGRRQTEKSK KKKKMKVESI  180
SDGSEDDTLI VPEFTITIKK SYLIFLGIPK MFEQLHMPKE TTMFKIHDPE RETSWDVMYK  240
FINNKQSRFC AGWIRLAKDL GLTIGDVCTF TLVKPTEMVV TVTRREINL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492802.10.0PREDICTED: B3 domain-containing protein At5g18090-like
SwissprotQ9FK611e-144Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A178UPJ11e-142A0A178UPJ1_ARATH; Uncharacterized protein
STRINGXP_010492802.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-146B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]