PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g026620.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 421aa MW: 47778.4 Da PI: 7.2101

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g026620.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	9e-34	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Csa20g026620.1 28 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-32	26	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	27	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.1E-24	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	5.5E-8	129	149	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain
Pfam	PF14379	4.0E-11	178	203	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MPIPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM 60 KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENLPEA EESHSESLSI 120 GPQPSMNLPI SDALQMQIEV QRRLHEQLER LEQPYRNREN KKAFSYNFIK KYFILSQVQR 180 HLQLRIEAQG KYLQSILEKA QETLGRQNLG AAGIEATKAQ LSELVSKVSA EYPESSFLEP 240 KEVQNLRHQQ QMQTTYPPNS SLDSCLTSSE GTQKAPKMLE NNRLGLRTYI GDSTSEQKEV 300 MEEPFFHRME LTWAEEESIR ENNNRQPPYI STMVNNNAEP RVSSSRRSPG RLSIGVGLQH 360 EHRGGSSNNS EYTQERFNEN GESCKMETHT RTTLDLNTHD ENYGTTTRTK QFDLNGFSWN 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MPIPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENLPEA EESHSESLSI  120
GPQPSMNLPI SDALQMQIEV QRRLHEQLER LEQPYRNREN KKAFSYNFIK KYFILSQVQR  180
HLQLRIEAQG KYLQSILEKA QETLGRQNLG AAGIEATKAQ LSELVSKVSA EYPESSFLEP  240
KEVQNLRHQQ QMQTTYPPNS SLDSCLTSSE GTQKAPKMLE NNRLGLRTYI GDSTSEQKEV  300
MEEPFFHRME LTWAEEESIR ENNNRQPPYI STMVNNNAEP RVSSSRRSPG RLSIGVGLQH  360
EHRGGSSNNS EYTQERFNEN GESCKMETHT RTTLDLNTHD ENYGTTTRTK QFDLNGFSWN  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g026620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB012246	0.0	AB012246.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010492826.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Refseq	XP_019097265.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	D7LXT0	0.0	D7LXT0_ARALL; Uncharacterized protein
STRING	XP_010492826.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]