PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g026620.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 393aa MW: 44214.3 Da PI: 6.4566

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g026620.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.1e-34	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Csa20g026620.2 28 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	26	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	27	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.3E-24	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-10	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-25	129	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MPIPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM 60 KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENLPEA EESHSESLSI 120 GPQPSMNLPI SDALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE KAQETLGRQN 180 LGAAGIEATK AQLSELVSKV SAEYPESSFL EPKEVQNLRH QQQMQTTYPP NSSLDSCLTS 240 SEGTQKAPKM LENNRLGLRT YIGDSTSEQK EVMEEPFFHR MELTWAEEES IRENNNRQPP 300 YISTMVNNNA EPRVSSSRRS PGRLSIGVGL QHEHRGGSSN NSEYTQERFN ENGESCKMET 360 HTRTTLDLNT HDENYGTTTR TKQFDLNGFS WN*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MPIPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQA NSSLNKTSVM TMVEENLPEA EESHSESLSI  120
GPQPSMNLPI SDALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQSILE KAQETLGRQN  180
LGAAGIEATK AQLSELVSKV SAEYPESSFL EPKEVQNLRH QQQMQTTYPP NSSLDSCLTS  240
SEGTQKAPKM LENNRLGLRT YIGDSTSEQK EVMEEPFFHR MELTWAEEES IRENNNRQPP  300
YISTMVNNNA EPRVSSSRRS PGRLSIGVGL QHEHRGGSSN NSEYTQERFN ENGESCKMET  360
HTRTTLDLNT HDENYGTTTR TKQFDLNGFS WN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g026620.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010492826.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Refseq	XP_019097265.1	0.0	PREDICTED: myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	D7LXT0	0.0	D7LXT0_ARALL; Uncharacterized protein
STRING	XP_010492826.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]