PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 147aa    MW: 17144.6 Da    PI: 9.4743
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM323.6e-102110334127
             NAM  34 ikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvm 123
                     +++ + y  +Pw+L+++ ++  + +ew++F+kr++k +             Wk tg  k v +    +g+++g k+ L fy +++p+     W+m
  Csa20g026680.1  21 FNKENSYAEKPWQLNHTKNNifKPNEWFYFVKRNRKVK------------GWKDTGGLKYVNVVsrkTGRVIGKKRNLSFYVKSKPS----GWTM 99 
                     667789999*****84322245778******9877642............3*****988776654457888**********777777....6*** PP

             NAM 124 heyr 127
                      ey+
  Csa20g026680.1 100 TEYS 103
                     ***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023658.3E-812103IPR003441NAC domain
SuperFamilySSF1019411.31E-1424106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAMVEECYAD DEEDELVGFG FNKENSYAEK PWQLNHTKNN IFKPNEWFYF VKRNRKVKGW  60
KDTGGLKYVN VVSRKTGRVI GKKRNLSFYV KSKPSGWTMT EYSSFIYEQI LPKPSSLPPP  120
QRTMIILLGE SQRMIMEDDS FASLYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097373.11e-89PREDICTED: NAC domain-containing protein 35-like
TrEMBLQ9FK421e-31Q9FK42_ARATH; At5g18300
STRINGXP_010454060.12e-60(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14744821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-36NAC domain containing protein 88