PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 430aa    MW: 47455.1 Da    PI: 9.313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183383256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g+
  Csa20g026830.1 33 NFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                    69****999.**********8...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-143283IPR001471AP2/ERF domain
CDDcd000184.37E-293288No hitNo description
PROSITE profilePS5103220.4153390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-283389IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-193389IPR016177DNA-binding domain
SMARTSM003802.9E-343396IPR001471AP2/ERF domain
PRINTSPR003674.5E-93445IPR001471AP2/ERF domain
PRINTSPR003674.5E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCNFRGVRQR TWGKWVAEIR EPNRGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQQQVV NRNLSFSGHG SGSWSHKLDT  120
VCGLDLGLGP ASGPRGSWSG RSSFLQEDDD HNNNRCVPSS GSSLCWLLPK QSNSQDQESV  180
NAASGGSGEG GGGSSLTFST KLKPRNMVNP NYGLSNGAWS RFLVGQEKKT EHEVSSSCGS  240
TDNKESMSVP SCGVERLHRP EMEQGTGYLE MDDLLEIDDL GHVSDSGSQL IAQHRRDHEL  300
QSSDCVRRLR CDTIIKRFGL LQEGVMPSLV SISVNGSARG REKSQKLLML FREQCQQRDQ  360
PSPNIDESPQ KEPPRKSLSV LMSLHGSTTP ASPSVEGFEP RVLSKSMSRR KSLARPFSFF  420
WKKSYSIRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143389259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516260.0AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608530.0AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260740.0BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097155.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097156.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097157.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097158.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097159.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097160.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097161.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097162.10.0PREDICTED: dehydration-responsive element-binding protein 2G
RefseqXP_019097163.10.0PREDICTED: dehydration-responsive element-binding protein 2G
SwissprotP618271e-163DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A178UDI41e-161A0A178UDI4_ARATH; Uncharacterized protein
STRINGXP_010492849.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-137ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]