PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g027270.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 259aa MW: 29862.6 Da PI: 11.261

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g027270.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	28	5e-09	17	58	17	59
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + g+ D C+ f++ geegt++a+ C CgCH FH + v++ Csa20g027270.1 17 INGEPKDHCRHFVAG-GEEGTPEAFLCGGCGCHVCFHWKYVKK 58 667888******8.999****************998765 PP
2	ZF-HD_dimer	36.7	9.6e-12	67	98	4	35
ZF-HD_dimer 4 vrYkeClkNhAaslGgh.avDGCgEfmpsegee 35 v+Y +ClkNh a++Gg ++DGCgEfm++ g e Csa20g027270.1 67 VKYGKCLKNHMAHMGGRcSLDGCGEFMAA-GVE 98 89************7369******9.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-4	17	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.3E-7	18	54	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.0E-9	67	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	0.001	67	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	11.304	69	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSKWREIVTY GMCVNRINGE PKDHCRHFVA GGEEGTPEAF LCGGCGCHVC FHWKYVKKEI 60 DMSTAIVKYG KCLKNHMAHM GGRCSLDGCG EFMAAGVEAR SLSRSYSPRP RHRSPPRDRK 120 TTYDDNRHRE RLSSRDHESS DPSGLLIRNL PLDASGRHGD YKRTSHRSPR RRYRSHSRSR 180 SPPRRDSRHS KGREDDLYSP QRSRSISRSP LPRKEKKDKS YNVSQSPRRN RRSRGEERVL 240 TPIRSRSLSR SRSRSLSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g027270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ293797	1e-63	AJ293797.1 Arabidopsis thaliana mRNA for SC35-like splicing factor SCL28, 28 kD.
GenBank	DQ446966	1e-63	DQ446966.1 Arabidopsis thaliana clone pENTR221-At5g18810 28 kDa SC35-like splicing factor (At5g18810) mRNA, complete cds.
GenBank	DQ653294	1e-63	DQ653294.1 Arabidopsis thaliana clone 0000019121_0000013167 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	5e-08	mini zinc finger 1