PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g036010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 259aa MW: 29293.2 Da PI: 5.9776

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g036010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.6	1.4e-41	14	157	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk................kvkaeekewyfFskrdkkyatgkrknratk 79 + GfrF Pt+eelv +yL++++eg++ +++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t Csa20g036010.1 14 TTGFRFYPTEEELVAFYLRNQLEGRSdVSVHRVIPVLDVFEVEPSHLPMlvyyiylhcladmsgeRCRGDVEQWFFFVPRQEREARGGRPSRTTG 108 68********************997788889***********668999999999887776666888******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+ +v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa20g036010.1 109 SGYWKATGSPGPVFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 157 *********************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-42	11	181	IPR003441	NAC domain
PROSITE profile	PS51005	44.227	13	182	IPR003441	NAC domain
Pfam	PF02365	9.3E-23	15	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MCSLYHTEMA DEVTTGFRFY PTEEELVAFY LRNQLEGRSD VSVHRVIPVL DVFEVEPSHL 60 PMLVYYIYLH CLADMSGERC RGDVEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP 120 VFSKDNRMIG VKKTMVFYTG KAPTGRKTKW KMNEYKAVDE TVNASTAPQV RHEFSLCRVY 180 VTTGSSRAFD RRPPVGVLPP ERMLTSEVAV AGTSSFRVES SPETSISGGE QHVDLSMNVD 240 LVEGLTEPIW EWEQLSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-30	16	187	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-30	16	187	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-30	16	187	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-30	16	187	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-30	16	187	23	173	NAC domain-containing protein 19
3swm_B	4e-30	16	187	23	173	NAC domain-containing protein 19
3swm_C	4e-30	16	187	23	173	NAC domain-containing protein 19
3swm_D	4e-30	16	187	23	173	NAC domain-containing protein 19
3swp_A	4e-30	16	187	23	173	NAC domain-containing protein 19
3swp_B	4e-30	16	187	23	173	NAC domain-containing protein 19
3swp_C	4e-30	16	187	23	173	NAC domain-containing protein 19
3swp_D	4e-30	16	187	23	173	NAC domain-containing protein 19
4dul_A	4e-30	16	187	20	170	NAC domain-containing protein 19
4dul_B	4e-30	16	187	20	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g036010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	1e-164	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	1e-164	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493320.1	1e-179	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-144	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R0FHF5	1e-148	R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010493320.1	1e-178	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-135	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]