PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g036010.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 247aa MW: 27808.3 Da PI: 6.053

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g036010.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.8	6.9e-43	14	145	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + GfrF Pt+eelv +yL++++eg++ +++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ + Csa20g036010.2 14 TTGFRFYPTEEELVAFYLRNQLEGRSdVSVHRVIPVLDVFEVEPSHLPNmsgeRCRGDVEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGP 108 68********************997788889***********546666666888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+sk+++ +g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa20g036010.2 109 VFSKDNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 145 *********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-46	11	169	IPR003441	NAC domain
PROSITE profile	PS51005	46.675	13	170	IPR003441	NAC domain
Pfam	PF02365	4.6E-23	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MCSLYHTEMA DEVTTGFRFY PTEEELVAFY LRNQLEGRSD VSVHRVIPVL DVFEVEPSHL 60 PNMSGERCRG DVEQWFFFVP RQEREARGGR PSRTTGSGYW KATGSPGPVF SKDNRMIGVK 120 KTMVFYTGKA PTGRKTKWKM NEYKAVDETV NASTAPQVRH EFSLCRVYVT TGSSRAFDRR 180 PPVGVLPPER MLTSEVAVAG TSSFRVESSP ETSISGGEQH VDLSMNVDLV EGLTEPIWEW 240 EQLSWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-33	16	175	20	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-33	16	175	20	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-33	16	175	20	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-33	16	175	20	170	NO APICAL MERISTEM PROTEIN
3swm_A	6e-33	16	175	23	173	NAC domain-containing protein 19
3swm_B	6e-33	16	175	23	173	NAC domain-containing protein 19
3swm_C	6e-33	16	175	23	173	NAC domain-containing protein 19
3swm_D	6e-33	16	175	23	173	NAC domain-containing protein 19
3swp_A	6e-33	16	175	23	173	NAC domain-containing protein 19
3swp_B	6e-33	16	175	23	173	NAC domain-containing protein 19
3swp_C	6e-33	16	175	23	173	NAC domain-containing protein 19
3swp_D	6e-33	16	175	23	173	NAC domain-containing protein 19
4dul_A	8e-33	16	175	20	170	NAC domain-containing protein 19
4dul_B	8e-33	16	175	20	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g036010.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493320.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-148	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	R0FHF5	1e-153	R0FHF5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010493320.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-139	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]