PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g038220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 264aa MW: 28263.3 Da PI: 10.5261

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g038220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.1	1.3e-37	34	154	3	130
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +sn+s + Csa20g038220.1 34 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGSNNSTSlssslldhk 127 79*************************************************************99999777.22333333322222333444444 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakarararertrekm 130 + a e +++ + Csa20g038220.1 128 pttllgssspfilgkrvR--------------------------------ADEDSHNHN 154 444444322233222221................................222222111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.3E-34	39	169	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSINNNGVMI SSSSNGSALI EQQQQQKSSS SVVVKKPPAK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTASVSI RGSNNSTSLS 120 SSLLDHKPTT LLGSSSPFIL GKRVRADEDS HNHNNNNSSG GKDESFTTTT PAGFWAVPAR 180 PDFGQVWSFT GGGAPVQEMF LQQHQHHQQP LFVHHHQQQQ QQQAAMGEAS AARVGNYLPG 240 HLNLLASLSG GSPGSGRRDE DPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g038220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493447.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-132	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A178UB73	1e-125	A0A178UB73_ARATH; Uncharacterized protein
STRING	XP_010493447.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-81	TCP family protein