PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 241aa    MW: 27353.9 Da    PI: 6.7853
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.1e-172470449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly.ey 49
                    ++ s++++ ++ R ++++KKA+ELS+LCd+e +vi++  +g+l  ++
  Csa20g038240.1 24 SSVSKKTTNLALREKTMFKKASELSILCDVELCVIYYNRDGELVgTW 70
                    677899999********************************985356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-51272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3862366IPR002100Transcription factor, MADS-box
CDDcd002666.24E-182798No hitNo description
SuperFamilySSF554553.66E-1428107IPR002100Transcription factor, MADS-box
PfamPF003191.3E-113466IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVSSSSSSSM LSVRNRKCFK PSLSSVSKKT TNLALREKTM FKKASELSIL CDVELCVIYY  60
NRDGELVGTW PEDQSKVRDM AERYSKLNDS ERRKKSTNLS QFLNKKTDKK TSLDINDKRF  120
SEKLLEMEAS LESNLRVLQD QHLRVLQNQT EQPDQNPLVS SAGFFTTLMS GGVSKTEQYL  180
STPSSTQQLP PLMMQTPLVH FDDQLFAEWN PSSFSFAEDP SLMFSSFAED PSLMFSSFYH  240
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493449.11e-176PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9N28e-50AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1195e-66R0H119_9BRAS; Uncharacterized protein
STRINGXP_010493449.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-55AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]