PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26905.6 Da    PI: 9.4656
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.79.5e-11634735
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaev 35
                    s++++ +  R ++++KKA+ELS+LCd+ev
  Csa20g038340.1  6 SKKTTNLPLREQTMFKKASELSILCDIEV 34
                    567788888*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.662134IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-8879IPR002100Transcription factor, MADS-box
PfamPF003191.9E-61534IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFPSVSKKTT NLPLREQTMF KKASELSILC DIEVRDRELV KTWPEYQSKV RDMAERFSKL  60
NNRERRKKST NLSLFLNKKT LKNKKTSFNI KDNKFSEKVL EMEASLESAL RVLQDKLLRL  120
QNQTEPDQNP VVSSAGFFTT DPSLMSGTSK VSVFLYNHDN GSFCQLPHSV SSFDPSMSTA  180
SLGAQGLCLR SNDSDLPMVF PPQIQTQTPP LVHFDQFAGW NQTPSSFADP VMFSSYN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2275202e-31AK227520.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-13-I07.
GenBankBT0045812e-31BT004581.1 Arabidopsis thaliana At5g26870 gene, complete cds.
GenBankCP0026882e-31CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankF2P162e-31AF007270.1 Arabidopsis thaliana BAC F2P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455071.11e-142PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H91e-78AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1191e-106R0H119_9BRAS; Uncharacterized protein
STRINGXP_010455071.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.11e-72AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]