PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 148aa    MW: 17222.5 Da    PI: 9.0724
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-091258347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W+ ++d  +  a + +  +   +W++Ia+ ++ g+t  +++++++++
   Csa20g038670.1 12 YWSRDDDIAFETALAFYDDErkiCWDSIAEVVP-GKTTAHIIDHYNNL 58
                     5*****************99*************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-6961IPR001005SANT/Myb domain
SuperFamilySSF466895.83E-101167IPR009057Homeodomain-like
PfamPF002495.0E-71258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-41361IPR009057Homeodomain-like
CDDcd001671.02E-61359No hitNo description
Gene3DG3DSA:1.10.10.602.7E-591148IPR009057Homeodomain-like
CDDcd001670.00155100148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTLGWNTSVG SYWSRDDDIA FETALAFYDD ERKICWDSIA EVVPGKTTAH IIDHYNNLIR  60
DVMDIESGRV PLPDYRVPEE PNPNARGKRK LKHKRQKGVS WTLDEHRFLL FTYFCNVTLQ  120
FLIGLAKYGK GDWRSISRNS VRTRTPTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495403.22e-91PREDICTED: uncharacterized protein LOC104772496
SwissprotQ9FNN61e-38SRM1_ARATH; Transcription factor SRM1
TrEMBLD7M2B88e-48D7M2B8_ARALL; Predicted protein
STRINGXP_010495403.11e-93(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-47Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]