PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g039060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22608.4 Da    PI: 4.9109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g039060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-141312049
                    HHHHHHHHHHHHT-EEEEEEE-TTSEEE.EE CS
          SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkly.ey 49
                    ++KKA+ELS+LCd+ev+vi++  +g+l  ++
  Csa20g039060.1  1 MFKKASELSILCDVEVCVIYYNRDGELVgTW 31
                    69***********************985356 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-13168IPR002100Transcription factor, MADS-box
PfamPF003199.0E-11127IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.316127IPR002100Transcription factor, MADS-box
CDDcd002662.57E-17159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MFKKASELSI LCDVEVCVIY YNRDGELVGT WPEDQSKVRD MAERYSKLND SERRKKSTNL  60
SQFLNKKTDK KTSLDINDKR FSEKLLEMEA SLESNIRVLQ DQHLRVLQNQ SQTEPLDQNP  120
LVSSPGFFTT LMSGGGVSKT EQYLSTPSST QQLPMVMMQT QTPPPLVHFD DQLFAEWNPS  180
SFSFAEDPSL MFSSFYH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g039060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495414.11e-146PREDICTED: agamous-like MADS-box protein AGL53
SwissprotQ7X9H94e-42AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1192e-54R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495414.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.12e-47AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]