PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g039560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 148aa    MW: 16889.8 Da    PI: 10.1393
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g039560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11736130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     r++W+ eEde ++ avk++G g+W++Ia++
   Csa20g039560.1  7 RKKWSSEEDEEIIAAVKRHGEGSWALIAKE 36
                     79**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.819258IPR017930Myb domain
SuperFamilySSF466891.93E-11361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-14350IPR009057Homeodomain-like
SMARTSM007171.2E-8657IPR001005SANT/Myb domain
PfamPF002491.9E-9737IPR001005SANT/Myb domain
CDDcd116601.23E-11850No hitNo description
PROSITE profilePS5001110.98719147IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.202.0E-1455120No hitNo description
SuperFamilySSF561126.06E-1558143IPR011009Protein kinase-like domain
PfamPF077144.3E-1163131IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAPRKRRKKW SSEEDEEIIA AVKRHGEGSW ALIAKEEFEG ERTPSQLSQR AIFVVTELWY  60
GSEIVAIKVV HRGTKPDEKS SLESHFIREV NMMSRVQHPN LVKFIGACKD PLMVIVTELL  120
PRLSLRKYLA TIRPQVLRLP LAFVLCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g039560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0739432e-58AC073943.5 Arabidopsis thaliana chromosome 1 BAC F16M22 genomic sequence, complete sequence.
GenBankAC0791312e-58AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAK1171282e-58AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195472e-58AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059712e-58BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
GenBankCP0026842e-58CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493564.13e-99PREDICTED: probable serine/threonine-protein kinase DDB_G0282963 isoform X2
TrEMBLA0A1J3EY091e-40A0A1J3EY09_NOCCA; Serine/threonine-protein kinase HT1
TrEMBLA0A1J3H3Z99e-41A0A1J3H3Z9_NOCCA; Serine/threonine-protein kinase HT1
TrEMBLA0A1J3K0879e-41A0A1J3K087_NOCCA; Serine/threonine-protein kinase HT1
STRINGXP_010493564.11e-98(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.11e-26MYB_related family protein