PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g055260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21513.8 Da    PI: 10.1256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g055260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.2e-173578850
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++++ +  R ++++KKA+ LS+LCd+ev+vi+++ +g+l ++++
  Csa20g055260.1 35 KKTTNLPLREQTMFKKASKLSILCDIEVCVIYYGRDGELiKTWP 78
                    66777888*****************************9856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-41979IPR002100Transcription factor, MADS-box
CDDcd002661.91E-1634105No hitNo description
PROSITE profilePS500669.4613480IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-1335103IPR002100Transcription factor, MADS-box
PfamPF003192.1E-104373IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTSSSMLTKD KTMKLLSVRN RRCFKKQPSL SFVSKKTTNL PLREQTMFKK ASKLSILCDI  60
EVCVIYYGRD GELIKTWPED QSKVQDMAER FSNLNDRERR KKSRDLSLFL NKKTLKDKKT  120
SFDIKDNKFS EKVLEMEASL ESALRVLQDK LLRLQNQTEP DQNPVVSSAG FFTTDPSLMS  180
GIEQDL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g055260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455071.11e-112PREDICTED: agamous-like MADS-box protein AGL93
RefseqXP_019084677.11e-113PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL53
SwissprotQ7X9N27e-56AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBLR0H1192e-73R0H119_9BRAS; Uncharacterized protein
STRINGXP_010495532.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.11e-65AGAMOUS-like 54
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]