PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g055290.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 131aa MW: 15208.4 Da PI: 8.19

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g055290.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.7	4.2e-15	1	32	20	50
HHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++KKA+ELS+LCd+ev+vi++ +g+l ++++ Csa20g055290.1 1 MFKKASELSILCDIEVCVIYYDRDGELvKTWP 32 69***********************9747887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.007	1	27	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-12	1	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-10	1	28	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MFKKASELSI LCDIEVCVIY YDRDGELVKT WPEDQSKVRD MAERFSKLND RERRKKSRDL 60 SLFLNKKTFK DKKTSFDIKD NKFSEKVLEM EASLEIALRN QTKPDQNPMV SSAGIFTTDP 120 SLMSRTEQDL *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g055290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493763	2e-54	AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580.
GenBank	AC007478	2e-54	AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence.
GenBank	AY141226	2e-54	AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds.
GenBank	BT025291	2e-54	BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds.
GenBank	CP002688	2e-54	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ446991	2e-54	DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds.
GenBank	DQ653312	2e-54	DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010424369.1	2e-74	PREDICTED: agamous-like MADS-box protein AGL93
Swissprot	Q7X9N2	1e-37	AGL53_ARATH; Agamous-like MADS-box protein AGL53
TrEMBL	R0H119	5e-52	R0H119_9BRAS; Uncharacterized protein
STRING	XP_010495532.1	2e-77	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5753	9	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27580.1	4e-42	AGAMOUS-like 89

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]