PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g055330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 284aa    MW: 31538.6 Da    PI: 8.4478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g055330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0581103123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k Fs++  L  H++ H
  Csa20g055330.1  81 YTCHFCKKGFSTSQALGGHQNAH 103
                     9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-778108No hitNo description
Gene3DG3DSA:3.30.160.603.4E-579107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.82281108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MENQAMSSSG SSTPKPEKLK GVVVATQKSK EKATRNTDLK LGSPQEVTSD RRTENPCFGS  60
SDVRRGREIM KIYPSKSNKI YTCHFCKKGF STSQALGGHQ NAHKQEREWD KKRKEMEADF  120
PGLAFLNPYL DKPHILLGGY SQDALSNENH LGITLDPFKR LVYPSFNRGV LGGLTDMNMT  180
VVPRVTPTRF FTGNASTNDI ASRVPDPLPK RSFPLISRNV YPFPPPRATK LFSDVALKEN  240
VLSEENFISK IGTNNVVEID DDDDIQPEED NSKSGEIDLS LSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g055330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073991e-177AC007399.1 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete sequence.
GenBankCP0026881e-177CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495535.10.0PREDICTED: uncharacterized protein LOC104772641
TrEMBLR0FJL21e-151R0FJL2_9BRAS; Uncharacterized protein
STRINGXP_010495535.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-152C2H2 family protein