PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g058610.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 113aa MW: 12547.3 Da PI: 10.1982

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g058610.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	40.4	6e-13	68	102	26	59
EE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 26 rCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +C++ gCp++k+ver+ ++++++++tYegeHnh+ Csa20g058610.1 68 KCSTVrGCPARKHVERCVDETSMLIVTYEGEHNHS 102 898877****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	2.1E-11	38	69	IPR018872	Zn-cluster domain
PROSITE profile	PS50811	14.952	50	104	IPR003657	WRKY domain
SMART	SM00774	8.3E-7	61	103	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.9E-12	66	102	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-10	68	103	IPR003657	WRKY domain
Pfam	PF03106	4.0E-10	68	101	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MDHSVTDYGR NSFHLFGLPQ GSDHMSQHPK RTSCSGSLIC GSRSKCHCSK KRKLRVKRSI 60 KVPAIKDKCS TVRGCPARKH VERCVDETSM LIVTYEGEHN HSRLPSSQSA HT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g058610.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF426255	6e-48	AF426255.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBank	AF442398	6e-48	AF442398.1 Arabidopsis thaliana WRKY transcription factor 74 (WRKY74) mRNA, complete cds.
GenBank	CP002688	6e-48	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	F4I4	6e-48	AF272705.1 Arabidopsis thaliana BAC F4I4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006288217.1	1e-60	probable WRKY transcription factor 74
Swissprot	Q93WU6	5e-59	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	R0H889	3e-59	R0H889_9BRAS; Uncharacterized protein
STRING	Cagra.5055s0003.1.p	3e-60	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	8e-47	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]