PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g058800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 374aa    MW: 42077.8 Da    PI: 5.4565
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g058800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.5e-33191245155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGs++AtPk++l+l++ +gLt++hvkSHLQkYR+
  Csa20g058800.1 191 KQRMRWTPELHEAFVEAVNQLGGSDRATPKAVLKLLNNPGLTIYHVKSHLQKYRT 245
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.897188248IPR017930Myb domain
SuperFamilySSF466891.24E-17189245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30189247IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23191245IPR006447Myb domain, plants
PfamPF002496.9E-11193244IPR001005SANT/Myb domain
PfamPF143797.8E-22279325IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNNPVPCQSV SGGNSGGYLF SSSSGFCNVS AVSPLGRNSQ TQPPVSTVPR DRLAMQDCTL  60
EAQSSSLINH HQPQEFTDPL QEFFDFSDHV PVQHLQAEES SGVRMDSSVE LHKKSEWQDW  120
ADQLISVDDG SEPNWSDFLG DPRSHNQNSE IPIPFSDVPR QEIKANQQHQ MVLSEEQLIG  180
RNASSSVATS KQRMRWTPEL HEAFVEAVNQ LGGSDRATPK AVLKLLNNPG LTIYHVKSHL  240
QKYRTARYKP ETSEVTGEPQ EKKLTSIEDI KSLDMKTSVE ITQALRLQME VQKRLHEQLE  300
IQRTLQLQIE KQGRYLQMMF EKQQKIQENK SSCSEASPKQ CNDTSAEVEF GLDTRTVEQA  360
ESPSASRKRV RED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-28191249260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g058800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459430.0AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds.
GenBankAY0851540.0AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence.
GenBankBT0023440.0BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494125.10.0PREDICTED: protein PHR1-LIKE 1-like
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLR0H7990.0R0H799_9BRAS; Uncharacterized protein
STRINGXP_010494125.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.30.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]