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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa20g063270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
BBR-BPC |
| Protein Properties |
Length: 343aa MW: 38208.2 Da PI: 9.7488 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa20g063270.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 408 | 1.1e-124 | 1 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd g+re r+k+ ++ +s+ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++e
Csa20g063270.1 1 MDDGGHREngRHKAAQGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRE 90
999999887888873331222222344.....5************************************************************** PP
GAGA_bind 89 nsla.......salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
ns++ sa p+g+q+++g+k++++ +++++ pql+d+a+e+re+e ++ lp++ a +a e++k+k+++r k+pk++++++++k+
Csa20g063270.1 91 NSMVtaaganmSAGPPGCQMSRGVKHMHHPHMHHHhqqhhiPQLTDNAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATTQTAANKR 185
**999999999999****************9976679999******************************************************* PP
GAGA_bind 171 sekskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiS 240
++k+++kvkkes+d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S
Csa20g063270.1 186 GPKNQRKVKKESEDDLtkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLS 280
************984358********************************88******************************************* PP
GAGA_bind 241 vyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
Csa20g063270.1 281 MYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 342
************************************88***********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAQGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM 60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAGAN MSAGPPGCQM SRGVKHMHHP 120
HMHHHHQQHH IPQLTDNAYE TREMEPNDGL PTSPPAGSAL ESAKPKRGKR VKDPKATTQT 180
AANKRGPKNQ RKVKKESEDD LTKIMFVKTT HDYTEEDSSK HILIGSKSDW KSQEMVGLNQ 240
VVYDETTMPP PVCSCTGVLR QCYKWGNGGW QSSCCTTTLS MYPLPALPNK RHARVGGRKM 300
SGSAFNKLLS RLAAEGHHDL SNPVDLKDHW AKHGTNRYIT IK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK221752 | 0.0 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. |
| GenBank | AK227246 | 0.0 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
| GenBank | BT024874 | 0.0 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. |
| GenBank | EF123108 | 0.0 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
