PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g066430.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 214aa    MW: 24141.7 Da    PI: 10.2057
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g066430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17114203198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h gk+ +   +tl de+g ++e  +    k+ +  l++GW +F+ a++L  gD++vF+l++ + f  +v 
  Csa20g066430.1 114 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKHDG--VITLIDEEGAEYETIY--LAKRTG--LSGGWMGFAIAHNLAYGDTLVFELVRPTAF--KVY 200
                     89************************666544..7***************..555544..************************997888..666 PP

                     EE- CS
              B3  96 vfr 98 
                     v+r
  Csa20g066430.1 201 VIR 203
                     665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-24108204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-19109203IPR015300DNA-binding pseudobarrel domain
CDDcd100177.74E-26112203No hitNo description
PROSITE profilePS5086312.111114205IPR003340B3 DNA binding domain
PfamPF023622.8E-14114203IPR003340B3 DNA binding domain
SMARTSM010192.1E-24114205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVVAKQSNYE EFRLKRVEEN KKRMEALNLP KLSRNLNPTS LKTSPMKKRC IPRTPEKAEK  60
QMVIVRRSSR LSNSSSTPVY REVDLQRVQN RRRDEAIARA EKFQADLGSD YPSFVKSMLQ  120
SHVSGGFWLG LPVQFCRSHL GKHDGVITLI DEEGAEYETI YLAKRTGLSG GWMGFAIAHN  180
LAYGDTLVFE LVRPTAFKVY VIRVGSSGES SEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g066430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076477e-71AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21.
GenBankCP0026887e-71CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495620.11e-145PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-108Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2H1ZE861e-112A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein
STRINGXP_010495620.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-108B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]