PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g066560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 227aa    MW: 26336.1 Da    PI: 9.2384
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g066560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer88.18.7e-2863116358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     k +Y eC+kNhAa++G++a+DGCgEf+++++e  + ++l+CaACgCHRnFHR e  
  Csa20g066560.1  63 KPHYGECRKNHAADIGTTAYDGCGEFVTATEE--EDQSLNCAACGCHRNFHREELI 116
                     679*************************9554..599***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015661.8E-2665114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-2365114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.86766114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1966116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-19154225IPR009057Homeodomain-like
SuperFamilySSF466896.57E-12163225IPR009057Homeodomain-like
TIGRFAMsTIGR015658.9E-29168224IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDEIKPKEEE KLKRRRNVKP ICRETGDHVH YPQPTTRKPK SKPTRTHHAP PPILESIFKV  60
THKPHYGECR KNHAADIGTT AYDGCGEFVT ATEEEDQSLN CAACGCHRNF HREELITDNG  120
VAETVLEVLK ISSLQFRQIF CSPYGGGKSK AKKKKEEKGE DLVEKRVKRL KTKFTAEQTE  180
KMKDYAEKLR WKVRPEMRDE VEEFCVEIGV NWNKFKIWMN NHKDKN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g066560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097252.11e-169PREDICTED: zinc-finger homeodomain protein 13-like
SwissprotQ9FMY71e-115ZHD13_ARATH; Zinc-finger homeodomain protein 13
TrEMBLA0A0G4NSG51e-113A0A0G4NSG5_ARATH; Homeobox protein 27
TrEMBLA0A384L2F91e-113A0A384L2F9_ARATH; ZHD13
STRINGXP_010494229.11e-156(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM158881113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.11e-102homeobox protein 27