PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067170.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 430aa    MW: 47965.4 Da    PI: 8.4144
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067170.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40178253277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  Csa20g067170.2 178 CQVEGCNIDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 253
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-33171239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812175252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-38176256IPR004333Transcription factor, SBP-box
PfamPF031102.3E-31178251IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MECNAKPSLQ WEWENLISFG ASSAETPRKI KPMEWELDGF DCTSLYSSNF AAVGYGGSSG  60
SDIAHAFSKS SKSASISSSS AEVRTYNFTS EAGESLPGEL GSSEEFAKGI NTSPSLELSF  120
GSGDPVLGLK LGKRTYFEDF WEVENGKGLG LPVSLASSSV SPVKKAKPIS QRLQTPHCQV  180
EGCNIDLSSA KDYHRKHRIC ENHSKFPKVV VSGVERRFCQ QCSRFHCLSE FDEKKRSCRR  240
RLSDHNARRR KPNPGRTYDG KPQVDFVWNR FALIHPRSEE NFLWPSSKPV PSRGLMQQPT  300
KTETSNKLFT EHCGFGLLDH ETKTARAELF SKEKVTISSH MGASQDLDGA LSLLSNSTTS  360
WDQPRRFSLD HHHPTRNLQS VAHRSVTQLN SVSNYWQPDP PAVDGPTTQH RNGIGQFNEN  420
YFSLNQFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-261782511184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233250KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g067170.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116250.0AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494302.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010494303.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010494304.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010494305.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010494306.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLR0G9X70.0R0G9X7_9BRAS; Uncharacterized protein
STRINGXP_010494302.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2