PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g068780.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 233aa    MW: 27674.6 Da    PI: 9.9466
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g068780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1185.4e-37191121103
                     HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     aFl+k+y+++ed+++++++sws+++nsf+v+++e+fa  +Lp+ Fkh+nf+SFvRQLn+YgFkkv++e+         weF++++F kg+++ll+
  Csa20g068780.1  19 AFLTKTYNMVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKVNTER---------WEFSNEYFLKGQRNLLK 104
                     69****************************************************************999.........***************** PP

                     XXXXXXXX CS
    HSF_DNA-bind  96 kikrkkse 103
                     +ikr+k++
  Csa20g068780.1 105 NIKRRKTS 112
                     *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.9E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.2E-5416109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-3716109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFNLPFPLE GLRETGPTAF LTKTYNMVED SSTNNIVSWS RDNNSFIVWE PETFALICLP  60
RCFKHNNFSS FVRQLNTYGF KKVNTERWEF SNEYFLKGQR NLLKNIKRRK TSSSQTHTQS  120
LEGGRFGLEG EIEELRSDRV ALVLELERLR RKQETMRTYL HSMEEKLKVT EVKQEMMMDF  180
LLKKIKKPSF FKGTRKRKMQ GFKNRERRQE VHETIVKAEP EEYVNDTADQ YGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-24191134109Heat shock factor protein 2
5d8l_B3e-24191134109Heat shock factor protein 2
5d8l_D3e-24191134109Heat shock factor protein 2
5d8l_F3e-24191134109Heat shock factor protein 2
5d8l_H3e-24191134109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
2193198TRKRKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g068780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470351e-134DQ447035.1 Arabidopsis thaliana clone pENTR221-At5g43840 heat shock transcription factor family protein (At5g43840) mRNA, complete cds.
GenBankDQ6533451e-134DQ653345.1 Arabidopsis thaliana clone 0000012923_0000009316 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445879.11e-161PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-6a-like
SwissprotQ1PDN31e-127HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLD7MNK41e-134D7MNK4_ARALL; AT-HSFA6A
STRINGXP_010445879.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-121heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]