PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g070120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 330aa    MW: 35808 Da    PI: 4.9728
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g070120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.83.8e-16243300461
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      +r+rr++kNRe+A rsR+RK+a++ eLe+ +++Le+eN+ L ke+e  +ke ++  +
  Csa20g070120.1 243 AQRQRRMIKNRESAARSRERKQAYQVELETLAAKLEEENELLSKEIEDKRKERYQKLM 300
                     79*********************************************99999887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-13239295No hitNo description
SMARTSM003384.4E-12240304IPR004827Basic-leucine zipper domain
PfamPF001703.2E-15242301IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.197242294IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.38E-10244296No hitNo description
CDDcd147075.59E-18244289No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASFQVMRSS NSRNSDLSHR IPSSSSSSIR PPQQQFMRDL TIGGYGGRND GGLLYSSTSM  60
TVEGILHDAF ASDPPAPTES SLLDASITLM DASPAPTTVV SDAVDHGGGG TETTREGRSV  120
DEVWRDMVSG EGKGMKEETQ EEIMTLEDFL AKAAGEDEGG AAVTAEDLDV KIPPPTNYGF  180
DHSAPPHNPF QMIDKVEGSI VAFGNGLDVY GGGGIGAGGG GSVGGARGKR ARVMVEPLDK  240
VAAQRQRRMI KNRESAARSR ERKQAYQVEL ETLAAKLEEE NELLSKEIED KRKERYQKLM  300
ECVIPVVEKP QQQQQQPPRF LRRIRSLEW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g070120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864571e-145AY086457.1 Arabidopsis thaliana clone 25211 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494407.10.0PREDICTED: G-box-binding factor 4-like
SwissprotP427773e-64GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A178UQ191e-173A0A178UQ19_ARATH; Uncharacterized protein
TrEMBLQ8LCQ71e-173Q8LCQ7_ARATH; Uncharacterized protein
STRINGXP_010494407.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.11e-115bZIP family protein