PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g076140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 454aa    MW: 50318.3 Da    PI: 6.9722
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g076140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof37.93.8e-122412653862
          zf-Dof  38 ryWtkGGalrnvPvGggrrknkkss 62 
                     +yWt+GG+lrnvPvGg++rknk+ss
  Csa20g076140.1 241 KYWTEGGSLRNVPVGGSSRKNKRSS 265
                     7*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484521.37E-523132IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.104.7E-625119IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484526.73E-1399215IPR011990Tetratricopeptide-like helical domain
PfamPF133740.01105139IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.107.2E-8120208IPR011990Tetratricopeptide-like helical domain
PfamPF134243.0E-8149210No hitNo description
PfamPF027012.0E-7241263IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-6241263IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MELSFEGNEL GLSALKLGLH LDREGEDPEK VLSYADKALK SFNGDGNNLL VAMALQLMGS  60
ANFGLKHFSD SLGYLNRANH ILVKLEADED NVAVEDVRPV LHAVQLELAN VKNAMGRREE  120
AIENLKKSLE IKEMTFDEDS KEMGVANRGL VDAYVAVLNF NEALPYALKA LEIHKKELGN  180
NSAEVAQDRR LLGVIYSGLE QHDKALEQNR LSQRVLKNWG MKLELIRAEI DAANMKVALG  240
KYWTEGGSLR NVPVGGSSRK NKRSSTHLAS PSNPKLPYLN LPILFSSQIP NKSKDLSLLS  300
FPVMQDHHHG MSHFLQMPKL ENNNTSSSIY ASSSPVSALE LLRSNGVSSR GMNTFLPGQM  360
MDSNSVLYSS LGFPTMPDYK QNQFQINKGD ARAKLIIGKQ NDSNREIKGD TFGESELEKH  420
GEADWLGESA KRLESFCETL SLRVCIAIRK MRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g076140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0065930.0AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence.
GenBankAY0639320.0AY063932.1 Arabidopsis thaliana putative kinesin light chain (At2g31240) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414161.11e-156PREDICTED: uncharacterized protein LOC104700347
TrEMBLR0HRV41e-153R0HRV4_9BRAS; Uncharacterized protein
STRINGXP_010414161.11e-156(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.46e-78Dof family protein