PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g077210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 310aa    MW: 34426.7 Da    PI: 7.5945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g077210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.6e-07249293143
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      +  W+  Ed  l++a k ++++   +W++Ia+ ++ g+t   c  r
   Csa20g077210.1 249 KETWSNGEDIALLNALKAFPKEaamRWEKIAAAVP-GKTKAACMKR 293
                      578********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-4157210IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-6158197IPR009057Homeodomain-like
CDDcd001672.78E-4161194No hitNo description
PROSITE profilePS500905.39161194IPR017877Myb-like domain
PROSITE profilePS500907.364244298IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-7246295IPR009057Homeodomain-like
SuperFamilySSF466891.56E-9248297IPR009057Homeodomain-like
SMARTSM007179.4E-7248300IPR001005SANT/Myb domain
PfamPF002493.3E-6249293IPR001005SANT/Myb domain
CDDcd001671.20E-5251298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDFFDEDRPR FVFQSRPSSS SHTTEEEEEP KIPNKIFISI SVAVSLIILS LSFFYFESEP  60
AKSLLLWLAL SFLVGPFAPS SITGGKIRVG YGQILEPEQI HDESSTDNER ESRRKSVNKR  120
SKGTTKQDNT PENASTVTEA SRKVATPKSK ESGSVNETKD WSEEEIELLK KQLIKHPAGK  180
PGRWEVVASA FGGRYKTENV IKKAKEIGEK KIYESDDYAQ FLKNRKASDP RLVDEDSGAG  240
GDDDDEANKE TWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKTKAAC MKRVTELKKG  300
FRSSKTPAN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g077210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0181130.0AB018113.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19.
GenBankAF3673450.0AF367345.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankAK1174670.0AK117467.1 Arabidopsis thaliana At5g45420 mRNA for unknown protein, complete cds, clone: RAFL17-08-A22.
GenBankAY0748390.0AY074839.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494645.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
SwissprotQ9ASQ21e-177MAMYB_ARATH; Transcription factor MAMYB
TrEMBLR0EUU60.0R0EUU6_9BRAS; Uncharacterized protein
STRINGXP_010494645.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-139MYB_related family protein