PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g077210.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 118aa    MW: 12923.4 Da    PI: 5.0025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g077210.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.4e-0857101143
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      +  W+  Ed  l++a k ++++   +W++Ia+ ++ g+t   c  r
   Csa20g077210.2  57 KETWSNGEDIALLNALKAFPKEaamRWEKIAAAVP-GKTKAACMKR 101
                      578********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.36452106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-754104IPR009057Homeodomain-like
SMARTSM007179.4E-756108IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-1056105IPR009057Homeodomain-like
PfamPF002495.6E-757101IPR001005SANT/Myb domain
CDDcd001679.11E-759106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MDFFDEDRPR FVFQSRPSSS SHTTEEEEEP KIPNKIFISI SVADSGAGGD DDDEANKETW  60
SNGEDIALLN ALKAFPKEAA MRWEKIAAAV PGKTKAACMK RVTELKKGFR SSKTPAN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g077210.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0181133e-68AB018113.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19.
GenBankAF3673453e-68AF367345.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankAK1174673e-68AK117467.1 Arabidopsis thaliana At5g45420 mRNA for unknown protein, complete cds, clone: RAFL17-08-A22.
GenBankAY0748393e-68AY074839.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankCP0026883e-68CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481586.11e-41PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010481587.11e-41PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010481588.11e-41PREDICTED: dnaJ homolog subfamily C member 2-like
SwissprotQ9ASQ29e-38MAMYB_ARATH; Transcription factor MAMYB
TrEMBLR0EUU65e-38R0EUU6_9BRAS; Uncharacterized protein
STRINGXP_010481586.15e-41(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-36MYB_related family protein